A number of alterations were made when the church was converted into the Valide Mosque. A mihrab (prayer niche) was added to the south wall, opposite a women's prayer balcony projecting from the north wall, which was supported by a new colonnade. Outside, a minaret was erected by the northeast corner.

The Valide Mosque (Venetian monastery church of San Salvatore) in the late 19th century (Heraklion)
The interior of San Salvatore as a mosque, 1900 - 1905 (G. Gerola, Vikelaia Municipal Library, Heraklion)